thanks for the replies. I had checked the TC wire and it seemed good. I had taken the exhaust fan cover off to check for the sensor hitting and blades but it seemed ok.
I have used high temp 1000* stove and gasket sealer on the inside and outside edge of the exhaust fan cover and it should be locked up pretty tight.
Started the stove up and got a roaring fire well above the burn pot until the air pump kicks out, at which point the fire got lower and lower until it is snuffed out. Started again and same thing; roaring fire until the pump shuts off and then I slowly lose the flame. If I crack the door a little, the flame seems to perk up but in the end it would still go out. There was still some smoke at startup in the right side, but cant tell where it is coming from. Could even a small leak destroy my flame? The only thing I may have disturbed is the exhaust cover and I think it is sealed up good now. I guess i could take off the venting and check for soot but that is of course a pain. There is a gap on the right side of my burn plates; could that leak exhaust into the stove somehow? I will try to close it up as advised; and i will reverse my HE cover plates. thanks for any advice, I just want to get her going again and shut my furnace back off.